MCP App Store
by KeenEthics
Health-Life-Sciences
Orain icon

Orain

by OrainBio, Inc.

Overview

Orain stores your tissue data (H&E and IHC whole-slide images, multiplex imaging such as CODEX/PhenoCycler, IMC and mIF, and spatial transcriptomics such as Visium, Xenium and CosMx) and runs the pipelines on its own GPUs, so Claude never has to move a multi-gigabyte slide. From a conversation you can: - Bring data in: upload a file, ingest any public URL, or pull open-access TCGA/CPTAC slides from NCI GDC. - Open a slide in an interactive viewer and get a link to it. - Outline every nucleus, measure tissue versus airspace, and name each tissue piece or TMA core. - Compute patch embeddings and discover spatial tissue patterns that separate two groups of patients, such as responders versus non-responders or KRAS versus STK11. - Ask an analysis question. Orain's own analyst works in your project and returns an answer and a written, reviewed report. - Share a read-only link that a collaborator can open without logging in. Every result has a page in Orain where you can see it on the slide. You need an Orain account. Storage, rented compute and analyst questions are charged at cost from your workspace credit, and new workspaces start with free credit.

Tools

annotate_tissue_pieces

Claude

ask_orain

Claude

cancel_run

Claude

cell_segmentation_stardist

Claude

check_wsi_discover_readiness

Claude

create_project

Claude

delete_project

Claude

fs_read

Claude

generate_signature_report

Claude

get_orain_answer

Claude

get_quota

Claude

get_run

Claude

get_started

Claude

ingest_url_to_project

Claude

list_cbioportal_studies

Claude

list_project_files

Claude

list_project_results

Claude

list_projects

Claude

query_cbioportal_mutations

Claude

queue_gdc_download

Claude

queue_gdc_downloads

Claude

run_wsi_embedding

Claude

search_gdc_slides

Claude

segment_tissue_on_slide

Claude

share_project

Claude

signature_discovery_cohort

Claude

upload_file_to_project

Claude

wait_for_downloads

Claude

wsi_viewer

Claude

App Stats

30

Tools

Claude

Platforms

Works with

Claude

Data refreshed daily